Biogeme
Contents:
Algorithms
Assisted specification
Biogeme
Catalog
Check parameters
Cross-nested logit
Configuration of a specification
Database
Default parameters
Distributions
Draws
Elementary expressions
Exceptions
Expressions
Filenames
ID manager
Welcome to Biogeme’s documentation!
Logging
Log likelihood
Models
Multiple expressions
Negative likelihood
Optimization
Parameters
Pareto
Results
Sampling
Segmentation
Specification
TOML parameter file
Tools
Version
Variable Neighborhood Search
Biogeme
Index
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Z
_
__add__() (biogeme.expressions.Expression method)
__and__() (biogeme.expressions.Expression method)
__div__() (biogeme.expressions.Expression method)
__eq__() (biogeme.configuration.Configuration method)
(biogeme.expressions.Expression method)
(biogeme.idmanager.IdManager method)
(biogeme.pareto.SetElement method)
__ge__() (biogeme.expressions.Expression method)
__gt__() (biogeme.expressions.Expression method)
__init__() (biogeme.algorithms.bioBounds method)
(biogeme.assisted.AssistedSpecification method)
(biogeme.assisted.ParetoPostProcessing method)
(biogeme.biogeme.BIOGEME method)
(biogeme.catalog.Catalog method)
(biogeme.catalog.SynchronizedCatalog method)
(biogeme.configuration.Configuration method)
(biogeme.database.Database method)
(biogeme.expressions.And method)
(biogeme.expressions.Beta method)
(biogeme.expressions.BinaryOperator method)
(biogeme.expressions.bioDraws method)
(biogeme.expressions.bioLinearUtility method)
(biogeme.expressions.bioMax method)
(biogeme.expressions.bioMin method)
(biogeme.expressions.bioMultSum method)
(biogeme.expressions.bioNormalCdf method)
(biogeme.expressions.ComparisonOperator method)
(biogeme.expressions.DefineVariable method)
(biogeme.expressions.Derive method)
(biogeme.expressions.Divide method)
(biogeme.expressions.Elem method)
(biogeme.expressions.Elementary method)
(biogeme.expressions.Equal method)
(biogeme.expressions.exp method)
(biogeme.expressions.Expression method)
(biogeme.expressions.Greater method)
(biogeme.expressions.GreaterOrEqual method)
(biogeme.expressions.Integrate method)
(biogeme.expressions.Less method)
(biogeme.expressions.LessOrEqual method)
(biogeme.expressions.log method)
(biogeme.expressions.LogLogit method)
(biogeme.expressions.logzero method)
(biogeme.expressions.Minus method)
(biogeme.expressions.MonteCarlo method)
(biogeme.expressions.NotEqual method)
(biogeme.expressions.Numeric method)
(biogeme.expressions.Or method)
(biogeme.expressions.PanelLikelihoodTrajectory method)
(biogeme.expressions.Plus method)
(biogeme.expressions.Power method)
(biogeme.expressions.RandomVariable method)
(biogeme.expressions.SelectedExpressionsIterator method)
(biogeme.expressions.Times method)
(biogeme.expressions.UnaryMinus method)
(biogeme.expressions.UnaryOperator method)
(biogeme.expressions.Variable method)
(biogeme.idmanager.IdManager method)
(biogeme.multiple_expressions.MultipleExpression method)
(biogeme.negative_likelihood.NegativeLikelihood method)
(biogeme.parameters.Parameters method)
(biogeme.pareto.Pareto method)
(biogeme.pareto.SetElement method)
(biogeme.results.beta method)
(biogeme.results.bioResults method)
(biogeme.results.rawResults method)
(biogeme.segmentation.DiscreteSegmentationTuple method)
(biogeme.segmentation.OneSegmentation method)
(biogeme.segmentation.Segmentation method)
(biogeme.specification.Specification method)
(biogeme.toml.Toml method)
(biogeme.tools.ModelNames method)
(biogeme.vns.OperatorsManagement method)
(biogeme.vns.ParetoClass method)
(biogeme.vns.ProblemClass method)
__le__() (biogeme.expressions.Expression method)
__lt__() (biogeme.expressions.Expression method)
__mul__() (biogeme.expressions.Expression method)
__ne__() (biogeme.expressions.Expression method)
__neg__() (biogeme.expressions.Expression method)
__or__() (biogeme.expressions.Expression method)
__pow__() (biogeme.expressions.Expression method)
__radd__() (biogeme.expressions.Expression method)
__rdiv__() (biogeme.expressions.Expression method)
__rmul__() (biogeme.expressions.Expression method)
__rpow__() (biogeme.expressions.Expression method)
__rsub__() (biogeme.expressions.Expression method)
__rtruediv__() (biogeme.expressions.Expression method)
__sub__() (biogeme.expressions.Expression method)
__truediv__() (biogeme.expressions.Expression method)
A
activity() (biogeme.algorithms.bioBounds method)
add() (biogeme.pareto.Pareto method)
(biogeme.vns.ParetoClass method)
addColumn() (biogeme.database.Database method)
AIC_BIC_dimension() (in module biogeme.results)
algorithm_name (biogeme.biogeme.BIOGEME property)
all_results (biogeme.specification.Specification attribute)
And (class in biogeme.expressions)
argument_warning() (biogeme.biogeme.BIOGEME method)
AssistedSpecification (class in biogeme.assisted)
audit() (biogeme.expressions.ComparisonOperator method)
(biogeme.expressions.Expression method)
(biogeme.expressions.Integrate method)
(biogeme.expressions.LogLogit method)
(biogeme.expressions.MonteCarlo method)
(biogeme.expressions.PanelLikelihoodTrajectory method)
(biogeme.expressions.Variable method)
(biogeme.idmanager.IdManager method)
av (biogeme.expressions.LogLogit attribute)
available (biogeme.vns.OperatorsManagement attribute)
B
batch (biogeme.negative_likelihood.NegativeLikelihood attribute)
bestIteration (biogeme.biogeme.BIOGEME attribute)
BETA (biogeme.elementary_expressions.TypeOfElementaryExpression attribute)
Beta (class in biogeme.expressions)
beta (class in biogeme.results)
beta_code() (biogeme.segmentation.OneSegmentation method)
(biogeme.segmentation.Segmentation method)
beta_expression() (biogeme.segmentation.OneSegmentation method)
beta_name() (biogeme.segmentation.OneSegmentation method)
beta_values_dict_to_list() (biogeme.biogeme.BIOGEME method)
betaNames (biogeme.results.rawResults attribute)
betas (biogeme.expressions.bioLinearUtility attribute)
(biogeme.results.rawResults attribute)
betaValues (biogeme.results.rawResults attribute)
bfgs() (in module biogeme.algorithms)
bfgsLineSearch() (in module biogeme.algorithms)
bfgsLineSearchForBiogeme() (in module biogeme.optimization)
bfgsTrustRegion() (in module biogeme.algorithms)
bfgsTrustRegionForBiogeme() (in module biogeme.optimization)
bhhh (biogeme.results.rawResults attribute)
bhhhv (biogeme.negative_likelihood.NegativeLikelihood attribute)
BinaryOperator (class in biogeme.expressions)
bioBfgs() (in module biogeme.optimization)
bioBounds (class in biogeme.algorithms)
bioDraws (class in biogeme.expressions)
BIOGEME (class in biogeme.biogeme)
biogeme.algorithms
module
biogeme.assisted
module
biogeme.biogeme
module
biogeme.catalog
module
biogeme.check_parameters
module
biogeme.cnl
module
biogeme.configuration
module
biogeme.database
module
biogeme.default_parameters
module
biogeme.distributions
module
biogeme.draws
module
biogeme.elementary_expressions
module
biogeme.exceptions
module
biogeme.expressions
module
biogeme.filenames
module
biogeme.idmanager
module
biogeme.logging
module
biogeme.loglikelihood
module
biogeme.models
module
biogeme.multiple_expressions
module
biogeme.negative_likelihood
module
biogeme.optimization
module
biogeme.parameters
module
biogeme.pareto
module
biogeme.results
module
biogeme.sampling
module
biogeme.segmentation
module
biogeme.specification
module
biogeme.toml
module
biogeme.tools
module
biogeme.version
module
biogeme.vns
module
BiogemeError
bioLinearUtility (class in biogeme.expressions)
bioMax (class in biogeme.expressions)
bioMin (class in biogeme.expressions)
bioMultSum (class in biogeme.expressions)
bioNewton() (in module biogeme.optimization)
bioNormalCdf (class in biogeme.expressions)
bioResults (class in biogeme.results)
bootstrap (biogeme.results.rawResults attribute)
bootstrap_pValue (biogeme.results.beta attribute)
bootstrap_results (biogeme.biogeme.BIOGEME attribute)
bootstrap_stdErr (biogeme.results.beta attribute)
bootstrap_time (biogeme.biogeme.BIOGEME attribute)
(biogeme.results.rawResults attribute)
bootstrap_tTest (biogeme.results.beta attribute)
bounds (biogeme.algorithms.bioBounds attribute)
boxcox() (in module biogeme.models)
breakpoints() (biogeme.algorithms.bioBounds method)
buildPanelMap() (biogeme.database.Database method)
C
calcPValue() (in module biogeme.results)
calculate_correlation() (in module biogeme.results)
calculateInitLikelihood() (biogeme.biogeme.BIOGEME method)
calculateLikelihood() (biogeme.biogeme.BIOGEME method)
calculateLikelihoodAndDerivatives() (biogeme.biogeme.BIOGEME method)
calculateNullLoglikelihood() (biogeme.biogeme.BIOGEME method)
calculatePrimeNumbers() (in module biogeme.tools)
catalog (biogeme.configuration.SelectionTuple attribute)
Catalog (class in biogeme.catalog)
catalog_name (biogeme.multiple_expressions.CatalogItem attribute)
catalog_size() (biogeme.multiple_expressions.MultipleExpression method)
CatalogItem (class in biogeme.multiple_expressions)
cauchyNewtonDogleg() (in module biogeme.algorithms)
change_neighborhood() (biogeme.vns.ParetoClass method)
changeInitValues() (biogeme.biogeme.BIOGEME method)
(biogeme.expressions.Beta method)
(biogeme.expressions.Expression method)
(biogeme.idmanager.IdManager method)
(biogeme.multiple_expressions.MultipleExpression method)
check (biogeme.default_parameters.ParameterTuple attribute)
check_algo_name() (in module biogeme.check_parameters)
check_draws() (biogeme.expressions.bioDraws method)
(biogeme.expressions.Expression method)
(biogeme.expressions.MonteCarlo method)
(biogeme.multiple_expressions.MultipleExpression method)
check_panel_trajectory() (biogeme.expressions.Expression method)
(biogeme.expressions.PanelLikelihoodTrajectory method)
(biogeme.expressions.Variable method)
(biogeme.multiple_expressions.MultipleExpression method)
check_parameter_value() (biogeme.parameters.Parameters static method)
check_rv() (biogeme.expressions.Expression method)
(biogeme.expressions.Integrate method)
(biogeme.expressions.RandomVariable method)
(biogeme.multiple_expressions.MultipleExpression method)
checkAvailabilityOfChosenAlt() (biogeme.database.Database method)
checkDerivatives() (biogeme.biogeme.BIOGEME method)
(in module biogeme.tools)
checkValidityCNL() (in module biogeme.models)
checkValidityNestedLogit() (in module biogeme.models)
child (biogeme.expressions.UnaryOperator attribute)
children (biogeme.expressions.Expression attribute)
choice (biogeme.expressions.LogLogit attribute)
choiceAvailabilityStatistics() (biogeme.database.Database method)
cnl() (in module biogeme.models)
cnl_avail() (in module biogeme.models)
cnl_CDF() (in module biogeme.cnl)
cnl_G() (in module biogeme.cnl)
cnlmu() (in module biogeme.models)
ComparisonOperator (class in biogeme.expressions)
compile_results_in_directory() (in module biogeme.results)
compileEstimationResults() (in module biogeme.results)
confidenceIntervals() (biogeme.biogeme.BIOGEME method)
config_id (biogeme.specification.Specification property)
Configuration (class in biogeme.configuration)
configure_catalogs() (biogeme.catalog.Catalog method)
(biogeme.expressions.Expression method)
(biogeme.multiple_expressions.MultipleExpression method)
configure_expression() (biogeme.specification.Specification method)
considered (biogeme.pareto.Pareto attribute)
contains_catalog() (biogeme.expressions.Expression method)
correlation_cross_nested() (in module biogeme.results)
correlation_nested() (in module biogeme.results)
count() (biogeme.database.Database method)
countNumberOfGroups() (in module biogeme.tools)
countPanelTrajectoryExpressions() (biogeme.expressions.Expression method)
(biogeme.expressions.PanelLikelihoodTrajectory method)
(biogeme.multiple_expressions.MultipleExpression method)
covariance_cross_nested() (in module biogeme.results)
cpp (biogeme.expressions.Expression attribute)
createFunction() (biogeme.expressions.Expression method)
current_configuration() (biogeme.catalog.Catalog method)
(biogeme.catalog.SynchronizedCatalog method)
(biogeme.expressions.Expression method)
(biogeme.multiple_expressions.MultipleExpression method)
D
data (biogeme.database.Database attribute)
(biogeme.results.bioResults attribute)
database (biogeme.biogeme.BIOGEME attribute)
(biogeme.specification.Specification attribute)
Database (class in biogeme.database)
dataname (biogeme.results.rawResults attribute)
decrease_configuration() (in module biogeme.assisted)
decrease_score_last_operator() (biogeme.vns.OperatorsManagement method)
decrement_several_catalogs() (in module biogeme.assisted)
default (biogeme.default_parameters.ParameterTuple attribute)
default_specification() (biogeme.specification.Specification class method)
DefineVariable (class in biogeme.expressions)
DefineVariable() (biogeme.database.Database method)
Derive (class in biogeme.expressions)
describe() (biogeme.specification.Specification method)
description (biogeme.default_parameters.ParameterTuple attribute)
descriptionOfNativeDraws() (biogeme.database.Database method)
dict_of_catalogs() (biogeme.expressions.Expression method)
(biogeme.multiple_expressions.MultipleExpression method)
dict_of_elementary_expression() (biogeme.expressions.Beta method)
(biogeme.expressions.bioDraws method)
(biogeme.expressions.bioLinearUtility method)
(biogeme.expressions.Expression method)
(biogeme.expressions.RandomVariable method)
(biogeme.expressions.Variable method)
(biogeme.multiple_expressions.MultipleExpression method)
dictOfExpressions (biogeme.expressions.Elem attribute)
DiscreteSegmentationTuple (class in biogeme.segmentation)
Divide (class in biogeme.expressions)
dogleg (biogeme.biogeme.BIOGEME property)
dogleg() (in module biogeme.algorithms)
dominates() (biogeme.pareto.SetElement method)
DRAWS (biogeme.elementary_expressions.TypeOfElementaryExpression attribute)
drawsProcessingTime (biogeme.biogeme.BIOGEME attribute)
(biogeme.results.rawResults attribute)
dump() (biogeme.pareto.Pareto method)
dump_file() (biogeme.toml.Toml method)
dumpOnFile() (biogeme.database.Database method)
DuplicateError
E
Elem (class in biogeme.expressions)
Elementary (class in biogeme.expressions)
elementaryIndex (biogeme.expressions.Elementary attribute)
ElementsTuple (class in biogeme.idmanager)
embedExpression() (biogeme.expressions.Expression method)
(biogeme.multiple_expressions.MultipleExpression method)
enlarging_factor (biogeme.biogeme.BIOGEME property)
Equal (class in biogeme.expressions)
estimate() (biogeme.biogeme.BIOGEME method)
(biogeme.specification.Specification method)
estimate_catalog() (biogeme.biogeme.BIOGEME method)
estimation (biogeme.database.EstimationValidation attribute)
EstimationValidation (class in biogeme.database)
excludedData (biogeme.database.Database attribute)
(biogeme.results.rawResults attribute)
exp (class in biogeme.expressions)
expression (biogeme.multiple_expressions.NamedExpression attribute)
(biogeme.specification.Specification attribute)
Expression (class in biogeme.expressions)
expressions (biogeme.idmanager.ElementsTuple attribute)
expressions_names_indices() (biogeme.idmanager.IdManager method)
F
f() (biogeme.algorithms.functionToMinimize method)
(biogeme.negative_likelihood.NegativeLikelihood method)
F12FileName (biogeme.results.rawResults attribute)
f_g() (biogeme.algorithms.functionToMinimize method)
(biogeme.negative_likelihood.NegativeLikelihood method)
f_g_bhhh() (biogeme.algorithms.functionToMinimize method)
(biogeme.negative_likelihood.NegativeLikelihood method)
f_g_h() (biogeme.algorithms.functionToMinimize method)
(biogeme.negative_likelihood.NegativeLikelihood method)
feasible() (biogeme.algorithms.bioBounds method)
files_of_type() (biogeme.biogeme.BIOGEME method)
findiff_g() (in module biogeme.tools)
findiff_H() (in module biogeme.tools)
fix_betas() (biogeme.expressions.Beta method)
(biogeme.expressions.Expression method)
(biogeme.multiple_expressions.MultipleExpression method)
FIXED_BETA (biogeme.elementary_expressions.TypeOfElementaryExpression attribute)
fixedBetaValues (biogeme.expressions.Expression attribute)
flatten_database() (in module biogeme.tools)
format (biogeme.results.GeneralStatistic attribute)
format_comment() (in module biogeme.toml)
formulas (biogeme.biogeme.BIOGEME attribute)
FREE_BETA (biogeme.elementary_expressions.TypeOfElementaryExpression attribute)
freeBetaNames() (biogeme.biogeme.BIOGEME method)
from_dict() (biogeme.catalog.Catalog class method)
(biogeme.catalog.SynchronizedCatalog class method)
(biogeme.configuration.Configuration class method)
from_string() (biogeme.configuration.Configuration class method)
from_string_id() (biogeme.specification.Specification class method)
from_tuple_of_configurations() (biogeme.configuration.Configuration class method)
fullData (biogeme.database.Database attribute)
fullIndividualMap (biogeme.database.Database attribute)
functionToMinimize (class in biogeme.algorithms)
fv (biogeme.negative_likelihood.NegativeLikelihood attribute)
G
g (biogeme.results.rawResults attribute)
generalizedCauchyPoint() (biogeme.algorithms.bioBounds method)
GeneralStatistic (class in biogeme.results)
generate_document() (biogeme.toml.Toml method)
generate_html (biogeme.biogeme.BIOGEME property)
generate_neighbor() (biogeme.vns.ProblemClass method)
generate_operator() (in module biogeme.assisted)
generate_pickle (biogeme.biogeme.BIOGEME property)
generate_unique_ids() (in module biogeme.tools)
generateDraws() (biogeme.database.Database method)
generateFlatPanelDataframe() (biogeme.database.Database method)
generateHtml (biogeme.biogeme.BIOGEME property)
generatePickle (biogeme.biogeme.BIOGEME property)
generic_name (biogeme.specification.Specification attribute)
get_beta_values() (biogeme.expressions.Expression method)
get_children() (biogeme.expressions.Expression method)
(biogeme.multiple_expressions.MultipleExpression method)
get_default_value() (in module biogeme.default_parameters)
get_element() (biogeme.specification.Specification method)
get_element_from_id() (biogeme.pareto.Pareto method)
get_file_logger() (in module biogeme.logging)
get_html() (biogeme.configuration.Configuration method)
get_id() (biogeme.expressions.Expression method)
(biogeme.multiple_expressions.MultipleExpression method)
get_iterator() (biogeme.catalog.Catalog method)
(biogeme.multiple_expressions.MultipleExpression method)
get_param_tuple() (biogeme.parameters.Parameters method)
get_pareto_ids() (biogeme.specification.Specification class method)
get_screen_logger() (in module biogeme.logging)
get_selection() (biogeme.configuration.Configuration method)
get_string_id() (biogeme.configuration.Configuration method)
get_value() (biogeme.parameters.Parameters method)
getAntithetic() (in module biogeme.draws)
getBetasForSensitivityAnalysis() (biogeme.results.bioResults method)
getBetaValues() (biogeme.results.bioResults method)
getBootstrapVarCovar() (biogeme.results.bioResults method)
getBoundsOnBeta() (biogeme.biogeme.BIOGEME method)
getClassName() (biogeme.expressions.Expression method)
getCorrelationResults() (biogeme.results.bioResults method)
getElementaryExpression() (biogeme.expressions.Elementary method)
(biogeme.expressions.Expression method)
(biogeme.multiple_expressions.MultipleExpression method)
getEstimatedParameters() (biogeme.results.bioResults method)
getF12() (biogeme.results.bioResults method)
getGeneralStatistics() (biogeme.results.bioResults method)
getHaltonDraws() (in module biogeme.draws)
getHtml() (biogeme.results.bioResults method)
(in module biogeme.version)
getLaTeX() (biogeme.results.bioResults method)
(in module biogeme.version)
getLatinHypercubeDraws() (in module biogeme.draws)
getMevForCrossNested() (in module biogeme.models)
getMevForCrossNestedMu() (in module biogeme.models)
getMevForNested() (in module biogeme.models)
getMevForNestedMu() (in module biogeme.models)
getMevGeneratingForNested() (in module biogeme.models)
getNewFileName() (in module biogeme.filenames)
getNormalWichuraDraws() (in module biogeme.draws)
getNumberOfObservations() (biogeme.database.Database method)
getPrimeNumbers() (in module biogeme.tools)
getRobustVarCovar() (biogeme.results.bioResults method)
getSampleSize() (biogeme.database.Database method)
getSignature() (biogeme.expressions.Beta method)
(biogeme.expressions.bioDraws method)
(biogeme.expressions.bioLinearUtility method)
(biogeme.expressions.Derive method)
(biogeme.expressions.Elem method)
(biogeme.expressions.Expression method)
(biogeme.expressions.Integrate method)
(biogeme.expressions.LogLogit method)
(biogeme.expressions.Numeric method)
(biogeme.expressions.RandomVariable method)
(biogeme.expressions.Variable method)
(biogeme.multiple_expressions.MultipleExpression method)
getStatusIdManager() (biogeme.expressions.Elementary method)
(biogeme.expressions.Expression method)
(biogeme.multiple_expressions.MultipleExpression method)
getText() (in module biogeme.version)
getUniform() (in module biogeme.draws)
getValue() (biogeme.expressions.And method)
(biogeme.expressions.Beta method)
(biogeme.expressions.bioMax method)
(biogeme.expressions.bioMin method)
(biogeme.expressions.bioMultSum method)
(biogeme.expressions.Divide method)
(biogeme.expressions.Elem method)
(biogeme.expressions.Equal method)
(biogeme.expressions.exp method)
(biogeme.expressions.Greater method)
(biogeme.expressions.GreaterOrEqual method)
(biogeme.expressions.Less method)
(biogeme.expressions.LessOrEqual method)
(biogeme.expressions.log method)
(biogeme.expressions.LogLogit method)
(biogeme.expressions.logzero method)
(biogeme.expressions.Minus method)
(biogeme.expressions.NotEqual method)
(biogeme.expressions.Numeric method)
(biogeme.expressions.Or method)
(biogeme.expressions.Plus method)
(biogeme.expressions.Power method)
(biogeme.expressions.Times method)
(biogeme.expressions.UnaryMinus method)
(biogeme.expressions.Variable method)
(biogeme.multiple_expressions.MultipleExpression method)
getValue_c() (biogeme.expressions.Expression method)
getValueAndDerivatives() (biogeme.expressions.Expression method)
getVarCovar() (biogeme.results.bioResults method)
getVersion() (in module biogeme.version)
gradientNorm (biogeme.results.rawResults attribute)
Greater (class in biogeme.expressions)
GreaterOrEqual (class in biogeme.expressions)
gv (biogeme.negative_likelihood.NegativeLikelihood attribute)
H
H (biogeme.results.rawResults attribute)
halton2() (biogeme.database.Database method)
halton3() (biogeme.database.Database method)
halton5() (biogeme.database.Database method)
htmlFileName (biogeme.results.rawResults attribute)
hv (biogeme.negative_likelihood.NegativeLikelihood attribute)
I
id_manager (biogeme.expressions.Expression attribute)
identification_threshold (biogeme.biogeme.BIOGEME property)
IdManager (class in biogeme.idmanager)
increase_configuration() (in module biogeme.assisted)
increase_score_last_operator() (biogeme.vns.OperatorsManagement method)
increment_several_catalogs() (in module biogeme.assisted)
indices (biogeme.idmanager.ElementsTuple attribute)
individualMap (biogeme.database.Database attribute)
infeasible_cg (biogeme.biogeme.BIOGEME property)
initial_radius (biogeme.biogeme.BIOGEME property)
initLogLike (biogeme.biogeme.BIOGEME attribute)
(biogeme.results.rawResults attribute)
Integrate (class in biogeme.expressions)
intersect() (biogeme.algorithms.bioBounds method)
intersectionWithTrustRegion() (biogeme.algorithms.bioBounds method)
inverseBfgs() (in module biogeme.algorithms)
is_boolean() (in module biogeme.check_parameters)
is_integer() (in module biogeme.check_parameters)
is_non_negative() (in module biogeme.check_parameters)
is_number() (in module biogeme.check_parameters)
is_positive() (in module biogeme.check_parameters)
is_valid() (biogeme.assisted.AssistedSpecification method)
(biogeme.vns.ProblemClass method)
isBoundActive() (biogeme.results.beta method)
isNumeric() (in module biogeme.expressions)
isPanel() (biogeme.database.Database method)
item_index (biogeme.multiple_expressions.CatalogItem attribute)
item_name (biogeme.multiple_expressions.CatalogItem attribute)
K
keep_id_manager (biogeme.expressions.Expression attribute)
keyExpression (biogeme.expressions.Elem attribute)
L
last_neighbor_accepted() (biogeme.vns.ProblemClass method)
last_neighbor_rejected() (biogeme.vns.ProblemClass method)
lastSample (biogeme.biogeme.BIOGEME attribute)
latexFileName (biogeme.results.rawResults attribute)
lb (biogeme.results.beta attribute)
left (biogeme.expressions.BinaryOperator attribute)
length() (biogeme.pareto.Pareto method)
length_of_all_sets() (biogeme.pareto.Pareto method)
Less (class in biogeme.expressions)
LessOrEqual (class in biogeme.expressions)
like (biogeme.negative_likelihood.NegativeLikelihood attribute)
like_deriv (biogeme.negative_likelihood.NegativeLikelihood attribute)
likelihood_ratio_test() (biogeme.results.bioResults method)
(in module biogeme.tools)
likelihoodFiniteDifferenceHessian() (biogeme.biogeme.BIOGEME method)
likelihoodregression() (in module biogeme.loglikelihood)
lineSearch() (in module biogeme.algorithms)
list_of_code() (biogeme.segmentation.OneSegmentation method)
list_of_expressions() (biogeme.segmentation.OneSegmentation method)
listOfTerms (biogeme.expressions.bioLinearUtility attribute)
locked (biogeme.expressions.Expression attribute)
log (class in biogeme.expressions)
log_statistics() (biogeme.assisted.AssistedSpecification method)
(biogeme.assisted.ParetoPostProcessing method)
logcnl() (in module biogeme.models)
logcnl_avail() (in module biogeme.models)
logcnlmu() (in module biogeme.models)
logger (in module biogeme.database)
logisticcdf() (in module biogeme.distributions)
logit() (in module biogeme.models)
loglike (biogeme.biogeme.BIOGEME attribute)
logLike (biogeme.results.rawResults attribute)
loglikelihood() (in module biogeme.loglikelihood)
loglikelihood_dimension() (in module biogeme.results)
loglikelihoodregression() (in module biogeme.loglikelihood)
loglikeName (biogeme.biogeme.BIOGEME attribute)
loglikeSignatures (biogeme.biogeme.BIOGEME attribute)
LogLogit (class in biogeme.expressions)
loglogit() (in module biogeme.models)
loglogit_sampling() (in module biogeme.models)
logmev() (in module biogeme.models)
logmev_endogenousSampling() (in module biogeme.models)
lognested() (in module biogeme.models)
lognestedMevMu() (in module biogeme.models)
lognormalpdf() (in module biogeme.distributions)
logzero (class in biogeme.expressions)
lowerBounds (biogeme.algorithms.bioBounds attribute)
LRTuple (class in biogeme.tools)
M
max_neighborhood (biogeme.vns.ParetoClass attribute)
maximum_number_catalog_expressions (biogeme.biogeme.BIOGEME property)
maximum_number_of_configurations (biogeme.expressions.Expression attribute)
maximumStep() (biogeme.algorithms.bioBounds method)
maxiter (biogeme.biogeme.BIOGEME property)
message (biogeme.tools.LRTuple attribute)
mev() (in module biogeme.models)
mev_cnl_sampling() (in module biogeme.sampling)
mev_endogenousSampling() (in module biogeme.models)
Minus (class in biogeme.expressions)
missing_data (biogeme.biogeme.BIOGEME property)
missingData (biogeme.biogeme.BIOGEME property)
(biogeme.expressions.Expression attribute)
mixedloglikelihood() (in module biogeme.loglikelihood)
MLHS_anti() (biogeme.database.Database method)
modelName (biogeme.biogeme.BIOGEME attribute)
(biogeme.results.rawResults attribute)
ModelNames (class in biogeme.tools)
modify_catalogs() (biogeme.catalog.Catalog method)
(biogeme.expressions.Expression method)
(biogeme.multiple_expressions.MultipleExpression method)
modify_random_catalogs() (in module biogeme.assisted)
modify_several_catalogs() (in module biogeme.assisted)
module
biogeme.algorithms
biogeme.assisted
biogeme.biogeme
biogeme.catalog
biogeme.check_parameters
biogeme.cnl
biogeme.configuration
biogeme.database
biogeme.default_parameters
biogeme.distributions
biogeme.draws
biogeme.elementary_expressions
biogeme.exceptions
biogeme.expressions
biogeme.filenames
biogeme.idmanager
biogeme.logging
biogeme.loglikelihood
biogeme.models
biogeme.multiple_expressions
biogeme.negative_likelihood
biogeme.optimization
biogeme.parameters
biogeme.pareto
biogeme.results
biogeme.sampling
biogeme.segmentation
biogeme.specification
biogeme.toml
biogeme.tools
biogeme.version
biogeme.vns
monteCarlo (biogeme.biogeme.BIOGEME attribute)
(biogeme.results.rawResults attribute)
MonteCarlo (class in biogeme.expressions)
multi_objectives (biogeme.specification.Specification attribute)
MultipleExpression (class in biogeme.multiple_expressions)
N
n (biogeme.algorithms.bioBounds attribute)
name (biogeme.database.Database attribute)
(biogeme.default_parameters.ParameterTuple attribute)
(biogeme.expressions.Elementary attribute)
(biogeme.multiple_expressions.NamedExpression attribute)
(biogeme.results.beta attribute)
NamedExpression (class in biogeme.multiple_expressions)
names (biogeme.idmanager.ElementsTuple attribute)
(biogeme.vns.OperatorsManagement attribute)
nativeRandomNumberGenerators (biogeme.database.Database attribute)
NegativeLikelihood (class in biogeme.negative_likelihood)
neighborhood_size (biogeme.vns.ParetoClass attribute)
nested() (in module biogeme.models)
nestedMevMu() (in module biogeme.models)
new (biogeme.biogeme.OldNewParamTuple attribute)
newtonLineSearch() (in module biogeme.algorithms)
newtonLineSearchForBiogeme() (in module biogeme.optimization)
newtonTrustRegion() (in module biogeme.algorithms)
newtonTrustRegionForBiogeme() (in module biogeme.optimization)
normal_antithetic() (biogeme.database.Database method)
normal_halton2() (biogeme.database.Database method)
normal_halton3() (biogeme.database.Database method)
normal_halton5() (biogeme.database.Database method)
normal_MLHS() (biogeme.database.Database method)
normal_MLHS_anti() (biogeme.database.Database method)
normalpdf() (in module biogeme.distributions)
NotEqual (class in biogeme.expressions)
nparam (biogeme.results.rawResults attribute)
nullLogLike (biogeme.biogeme.BIOGEME attribute)
(biogeme.results.rawResults attribute)
number_of_draws (biogeme.biogeme.BIOGEME property)
number_of_multiple_expressions() (biogeme.expressions.Elementary method)
(biogeme.expressions.Expression method)
number_of_threads (biogeme.biogeme.BIOGEME property)
numberOfDraws (biogeme.biogeme.BIOGEME property)
(biogeme.database.Database attribute)
(biogeme.expressions.Expression attribute)
(biogeme.results.rawResults attribute)
numberOfFreeParameters() (biogeme.results.bioResults method)
numberOfObservations (biogeme.results.rawResults attribute)
numberOfThreads (biogeme.biogeme.BIOGEME property)
(biogeme.results.rawResults attribute)
Numeric (class in biogeme.expressions)
O
old (biogeme.biogeme.OldNewParamTuple attribute)
OldNewParamTuple (class in biogeme.biogeme)
OneSegmentation (class in biogeme.segmentation)
only_robust_stats (biogeme.biogeme.BIOGEME property)
OperatorsManagement (class in biogeme.vns)
optimizationMessages (biogeme.biogeme.BIOGEME attribute)
(biogeme.results.rawResults attribute)
optimize() (biogeme.biogeme.BIOGEME method)
Or (class in biogeme.expressions)
P
panel() (biogeme.database.Database method)
panelColumn (biogeme.database.Database attribute)
PanelLikelihoodTrajectory (class in biogeme.expressions)
Parameters (class in biogeme.parameters)
ParameterTuple (class in biogeme.default_parameters)
pareto (biogeme.pareto.Pareto attribute)
(biogeme.specification.Specification attribute)
Pareto (class in biogeme.pareto)
pareto_optimal() (in module biogeme.results)
ParetoClass (class in biogeme.vns)
ParetoPostProcessing (class in biogeme.assisted)
pickleFileName (biogeme.results.rawResults attribute)
piecewise_as_variable() (in module biogeme.models)
piecewiseFormula() (in module biogeme.models)
piecewiseFunction() (in module biogeme.models)
piecewiseVariables() (in module biogeme.models)
plot() (biogeme.assisted.AssistedSpecification method)
(biogeme.assisted.ParetoPostProcessing method)
(biogeme.pareto.Pareto method)
Plus (class in biogeme.expressions)
Power (class in biogeme.expressions)
prepare() (biogeme.expressions.Expression method)
(biogeme.idmanager.IdManager method)
printGeneralStatistics() (biogeme.results.bioResults method)
ProblemClass (class in biogeme.vns)
process_numeric() (in module biogeme.expressions)
project() (biogeme.algorithms.bioBounds method)
pValue (biogeme.results.beta attribute)
Q
quickEstimate() (biogeme.biogeme.BIOGEME method)
R
RANDOM_VARIABLE (biogeme.elementary_expressions.TypeOfElementaryExpression attribute)
RandomVariable (class in biogeme.expressions)
rawResults (class in biogeme.results)
read_file() (biogeme.toml.Toml method)
recalculate (biogeme.negative_likelihood.NegativeLikelihood attribute)
record_values() (biogeme.toml.Toml method)
reestimate() (biogeme.assisted.AssistedSpecification method)
(biogeme.assisted.ParetoPostProcessing method)
relativeChange() (in module biogeme.algorithms)
relativeGradient() (in module biogeme.algorithms)
remove() (biogeme.database.Database method)
removed (biogeme.pareto.Pareto attribute)
rename_elementary() (biogeme.expressions.Elementary method)
(biogeme.expressions.Expression method)
(biogeme.multiple_expressions.MultipleExpression method)
requiresDraws() (biogeme.expressions.Expression method)
reset_expression_selection() (biogeme.expressions.Expression method)
(biogeme.multiple_expressions.MultipleExpression method)
reset_id_manager() (biogeme.biogeme.BIOGEME method)
reset_neighborhood() (biogeme.vns.ParetoClass method)
reset_this_expression_selection() (biogeme.catalog.Catalog method)
(biogeme.multiple_expressions.MultipleExpression method)
restore() (biogeme.pareto.Pareto method)
right (biogeme.expressions.BinaryOperator attribute)
robust_pValue (biogeme.results.beta attribute)
robust_stdErr (biogeme.results.beta attribute)
robust_tTest (biogeme.results.beta attribute)
run() (biogeme.assisted.AssistedSpecification method)
S
sample_alternatives() (in module biogeme.sampling)
sample_size (biogeme.sampling.StratumTuple attribute)
sampleIndividualMapWithReplacement() (biogeme.database.Database method)
sampleSize (biogeme.results.rawResults attribute)
sampleWithReplacement() (biogeme.database.Database method)
sampling_of_alternatives() (in module biogeme.sampling)
save_iterations (biogeme.biogeme.BIOGEME property)
saveIterations (biogeme.biogeme.BIOGEME property)
scaleColumn() (biogeme.database.Database method)
scaled (biogeme.negative_likelihood.NegativeLikelihood attribute)
schnabelEskow() (in module biogeme.algorithms)
scipy() (in module biogeme.optimization)
scores (biogeme.vns.OperatorsManagement attribute)
second_derivatives (biogeme.biogeme.BIOGEME property)
secondOrderTable (biogeme.results.rawResults attribute)
section (biogeme.biogeme.OldNewParamTuple attribute)
(biogeme.default_parameters.ParameterTuple attribute)
seed_param (biogeme.biogeme.BIOGEME property)
Segmentation (class in biogeme.segmentation)
segmentation_catalog() (in module biogeme.catalog)
segmented_beta() (biogeme.segmentation.Segmentation method)
segmented_code() (biogeme.segmentation.Segmentation method)
select() (biogeme.vns.ParetoClass method)
select_expression() (biogeme.catalog.Catalog method)
(biogeme.catalog.SynchronizedCatalog method)
(biogeme.expressions.Expression method)
select_operator() (biogeme.vns.OperatorsManagement method)
selected() (biogeme.catalog.Catalog method)
(biogeme.multiple_expressions.MultipleExpression method)
selected_expression() (biogeme.multiple_expressions.MultipleExpression method)
selected_name() (biogeme.multiple_expressions.MultipleExpression method)
SelectedExpressionsIterator (class in biogeme.expressions)
selection (biogeme.configuration.SelectionTuple attribute)
selections (biogeme.configuration.Configuration property)
SelectionTuple (class in biogeme.configuration)
set_index() (biogeme.catalog.Catalog method)
(biogeme.catalog.SynchronizedCatalog method)
set_of_catalogs() (biogeme.configuration.Configuration method)
set_of_configurations() (biogeme.catalog.Catalog method)
(biogeme.catalog.SynchronizedCatalog method)
(biogeme.expressions.Expression method)
set_of_elementary_expression() (biogeme.expressions.Expression method)
(biogeme.multiple_expressions.MultipleExpression method)
set_of_multiple_expressions() (biogeme.expressions.Expression method)
set_value() (biogeme.parameters.Parameters method)
set_value_from_tuple() (biogeme.parameters.Parameters method)
setBootstrapStdErr() (biogeme.results.beta method)
setData() (biogeme.idmanager.IdManager method)
setDataMap() (biogeme.idmanager.IdManager method)
SetElement (class in biogeme.pareto)
setIdManager() (biogeme.expressions.Beta method)
(biogeme.expressions.bioDraws method)
(biogeme.expressions.Expression method)
(biogeme.expressions.RandomVariable method)
(biogeme.expressions.Variable method)
(biogeme.multiple_expressions.MultipleExpression method)
setRandomInitValues() (biogeme.biogeme.BIOGEME method)
setRandomNumberGenerators() (biogeme.database.Database method)
setRobustStdErr() (biogeme.results.beta method)
setRow() (biogeme.expressions.Expression method)
setStdErr() (biogeme.results.beta method)
setVariables() (biogeme.algorithms.functionToMinimize method)
(biogeme.negative_likelihood.NegativeLikelihood method)
short_names (biogeme.biogeme.BIOGEME attribute)
shortSummary() (biogeme.results.bioResults method)
simpleBoundsNewtonAlgorithm() (in module biogeme.algorithms)
simpleBoundsNewtonAlgorithmForBiogeme() (in module biogeme.optimization)
simulate() (biogeme.biogeme.BIOGEME method)
Specification (class in biogeme.specification)
split() (biogeme.database.Database method)
statistic (biogeme.tools.LRTuple attribute)
statistics() (biogeme.assisted.AssistedSpecification method)
(biogeme.assisted.ParetoPostProcessing method)
stdErr (biogeme.results.beta attribute)
steptol (biogeme.biogeme.BIOGEME property)
StratumTuple (class in biogeme.sampling)
subset (biogeme.sampling.StratumTuple attribute)
subspace() (biogeme.algorithms.bioBounds method)
suggestScaling() (biogeme.database.Database method)
symm_halton2() (biogeme.database.Database method)
symm_halton3() (biogeme.database.Database method)
symm_halton5() (biogeme.database.Database method)
symm_MLHS() (biogeme.database.Database method)
symm_MLHS_anti() (biogeme.database.Database method)
symm_uniform() (biogeme.database.Database method)
symm_uniform_antithetic() (biogeme.database.Database method)
SynchronizedCatalog (class in biogeme.catalog)
T
TemporaryFile (class in biogeme.tools)
theDraws (biogeme.database.Database attribute)
threshold (biogeme.tools.LRTuple attribute)
Times (class in biogeme.expressions)
tolerance (biogeme.biogeme.BIOGEME property)
Toml (class in biogeme.toml)
triangularpdf() (in module biogeme.distributions)
truncatedConjugateGradient() (in module biogeme.algorithms)
truncatedConjugateGradientSubspace() (in module biogeme.algorithms)
trustRegionIntersection() (in module biogeme.algorithms)
tTest (biogeme.results.beta attribute)
type (biogeme.default_parameters.ParameterTuple attribute)
TypeOfElementaryExpression (class in biogeme.elementary_expressions)
typesOfDraws (biogeme.database.Database attribute)
(biogeme.results.rawResults attribute)
U
ub (biogeme.results.beta attribute)
UnaryMinus (class in biogeme.expressions)
UnaryOperator (class in biogeme.expressions)
uniform_antithetic() (biogeme.database.Database method)
uniformpdf() (in module biogeme.distributions)
upperBounds (biogeme.algorithms.bioBounds attribute)
userNotes (biogeme.biogeme.BIOGEME attribute)
(biogeme.results.rawResults attribute)
userRandomNumberGenerators (biogeme.database.Database attribute)
util (biogeme.expressions.LogLogit attribute)
V
validate() (biogeme.biogeme.BIOGEME method)
validation (biogeme.database.EstimationValidation attribute)
value (biogeme.expressions.Numeric attribute)
(biogeme.results.beta attribute)
(biogeme.results.GeneralStatistic attribute)
ValueOutOfRange
valuesFromDatabase() (biogeme.database.Database method)
VARIABLE (biogeme.elementary_expressions.TypeOfElementaryExpression attribute)
Variable (class in biogeme.expressions)
variables (biogeme.database.Database attribute)
(biogeme.expressions.bioLinearUtility attribute)
variance_covariance_missing() (biogeme.results.bioResults method)
vns() (in module biogeme.vns)
W
weight (biogeme.biogeme.BIOGEME attribute)
weightName (biogeme.biogeme.BIOGEME attribute)
weightSignatures (biogeme.biogeme.BIOGEME attribute)
writeF12() (biogeme.results.bioResults method)
writeHtml() (biogeme.results.bioResults method)
writeLaTeX() (biogeme.results.bioResults method)
writePickle() (biogeme.results.bioResults method)
X
x (biogeme.negative_likelihood.NegativeLikelihood attribute)
Z
zero_one() (in module biogeme.check_parameters)